Bioinformatics Research Group

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Past Members Brona Brejova PhD student, Research Assistant Professor 1999-2005,2005-2006 gene discovery, spaced seeds, algorithms, probabilistic models Tomas Vinar PhD student, Research Assistant Professor 1999-2005,2005-2006 gene discovery, hidden Markov models, algorithms for bioinformatics Mirela Andronescu Visiting PhD student (British Columbia) 2004-2005 algorithms and models for secondary structure of RNA sequences Gabriel Renaud MMath student 2004-2005 protein folding prediction Sriram Darbha MMath student 2003-2005 Shirley Hui MMath student 2002-2004 protein structural alignment Ian M. Harrower MMath student 2003-2005 haplotype inference, combinatorial optimization Chris Pal PhD student 2000-2004 machine learning techniques, probabilistic models and inference algorithms applied to gene expression arrays and biological sequence analysis Wolfgang Gerlach Visiting student (Bielefeld) 2004 homology search Libo Yu MMath student 2003-2004 protein fold recognition Jian Liu Postdoc 2003-2004 mass spectrometry analysis, machine learning Thomas Tang MMath student 2003-2004 local protein structure prediction Alex Hudek MMath student 2002-2004 sequence analysis, multiple sequence alignment Jiang Liu MMath student 2002-2004 motif discovery Sajani Swamy MMath student 2001-2004 Glycopeptide discovery and analysis via mass spectrometry Emily Wei Xu MMath student 1999-2004 transmembrane protein structure prediction Fengkai Zhang MMath student 2002-2004 homology search in protein sequences Jinbo Xu PhD student, Research Assistant Professor 1999-2003, 2003-2004 protein folding via integer programming, phylogenetics analysis Xiofang Lei Visiting PhD student (UCSB) 2002 homology search in DNA and protein sequences Paul Kearney Assistant Professor 1998-2002 design, analysis and implementation of algorithms for biological discovery, algorithms for phylogenetics, genome analysis and proteomics Derek Phillips MMath student 2000-2002 phylogenetic tree sampling and inference, formal language theory Mike Hu MMath student 1999-2002 phylogenetic analysis, protein interaction, gene discovery Henning Stehr Exchange student (Technische Universitat Hamburg-Harburg) 2001-2002 finding regulatory elements Chengzhi Liang MMath student 1999-2001 consensus pattern recognition in biosequences Christian Cumbaa MMath student 1997-2001 protein secondary structure prediction, probabilistic modeling, applications of machine learning to bioinformatics Guohui Lin Postdoc 1999-2001 bioinformatics, routing and design of networks, algorithms Jonathan Badger Postdoc 1999-2000 phylogenetic inference, gene finding Bin Ma Postdoc 2000 bioinformatics, algorithm design Deep Jaitly   MMath student till 2000 tandem repeats John Shing-Chun Tsang MMath student 1998-2000 genome comparison, phylogenetic analysis Haoyong Zhang MMath student 1998-2000 reconstruction of phylogenetic trees Kevin Lanctot PhD student, Research Associate, Instructor till 2000, 2003-2006 genetic drug design, compression of DNA sequences Huaichun Wang Postdoc sequence classification, protein family assignment, and whole genome analysis.

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